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standards [2011/07/06 17:28]
Admin
standards [2021/03/08 10:47]
Adrian Altenhoff [Standard File Formats]
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 ===== Standard File Formats ===== ===== Standard File Formats =====
-  * [[http://seqxml.org|SeqXML]] +  * [[http://orthoxml.org|SeqXML ​& OrthoXML]] 
-  * [[http://orthoxml.org|OrthoXML]]+  * [[http://dx.doi.org/​10.1093/​bib/​bbr025|Schmitt et al., Brief Bioinform 2011]] 
 +  * [[https://​github.com/​jhcepas/​ete/​blob/​2.2/​scripts/​etree2orthoxmlNewick to OrthoXML ​converter, based on ETE]] 
 +  * Orthology (ORTH) Ontology 
 +    * [[https://​qfo.github.io/​OrthologyOntology/​|Documentation]] 
 +    * [[https://​purl.org/​net/​orth|RDF/​Turtle file]] 
  
 ===== Benchmarking Service ===== ===== Benchmarking Service =====
   * [[http://​orthology.benchmark-service.org/​|Orthology Benchmarking]]   * [[http://​orthology.benchmark-service.org/​|Orthology Benchmarking]]