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—agenda_2009 [2017/02/17 16:53] (current) – created Cécile Pereira
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 +==== Friday 3 July ====
 +
 +13.00 – 13.30
 +Genome-wide identification of orthologs and phylogenetic gene tree reconstruction
 +Ilan Wapinski
 +(Broad Institute of MIT and Harvard, Cambridge, MA  USA)
 +
 +13.30 – 14.00
 +Whole Genome Orthology Prediction Among Amniotes
 +Leo Goodstadt
 +(MRC Functional Genetics Unit, University of Oxford, UK)
 +
 +14.00 – 14.30
 +Annotating Gene Histories
 +Guy Perriere, 
 +(University of Lyon, France)
 + 
 +14.30 – 15.00
 +Orthologs as the New Homologs – Evolution and Functional Inference
 +William Pearson
 +(William Pearson, USA)
 +
 +15.00 – 15.30
 +Phylogeny-Based Prediction of Orthology at Genomic Scales: Challenges and Opportunities 
 +Toni Gabaldon
 +(Centre for Genomic Regulation, Spain) 
 +
 +
 +16.00 – 16.20
 +Classifying of orthology relation and inferring protein interaction from correlations of evolutionary distances
 +Teresa Przytck
 +( NIH, USA)
 +
 +16.20 – 16.50
 +Orthology, Paralogy and Beyond:
 +Annotating Gene Function using Evolutionary Trees
 +Paul Thomas 
 +(SRI International, USA)
 +
 +16.50 – 17.20
 +Albert Vilella
 +(EBI, UK)
 +
 +17.20 – 17.50
 +Orthology Prediction in the Twilight Zone
 +Martijn Huynen
 +(Radboud University Nijmegen Medical Centre, Netherlands)
 +
 +==== Sat 4 July====
 +
 +
 +09.00 – 09.20
 +Using Synteny to Sort Out Reciprocal Gene Loss and Rapid Ortholog Divergence in Yeast Species
 +Ken Wolfe
 +(Smurfit Institute of Genetics, Ireland)
 +
 +09.20 – 09.40
 +Yeast researches need well-defined orthology dataset
 +Mike Cherry
 +(Stanford University USA)
 +
 +09.40 – 10.10
 +Erik Sonnhammer
 +(Stockholm University, Sweden)
 +
 +10.10 – 10.40
 +Efficient Bayesian Reconstruction and Reconciliation of Thousands of Gene Family Phylogenies Across Multiple Complete Genomes
 +Matt Rasmussen/Manolis Kellis
 +(MIT, USA)
 +
 +11.10 – 11.40 
 +The Gene Ontology's Reference Genome Project: 
 +a Unified Framework for Functional Annotation across Species
 +Pascale Gaudet
 +(Northwestern University, USA)
 +
 +11.40 – 12.10
 +PAINT: The GO Workbench for Protein Family Annotation
 +Suzanna Lewis, Lawrence Berkeley National Laboratory, USA
 +
 +12.10 – 12.40
 +Orthologs, Paralogs, and Functional Annotations Using The Gene Ontology
 +Judy Blake
 +(The Jackson Lab, USA)
 +
 +12.40 – 13.10
 +ProGMap: an integrated annotation resource for protein orthology
 +Jack Leunissen/Sandor Pongor
 +(Wageningen University, Netherlands)
 +
 +
 +13.40 – 14.00
 +HCOP: A one stop orthology shop
 +Michael Lush
 +(HGNC, UK)
 +
 +14.00 – 14.20
 +MBGD and RECOG: integrated platform for comparative genomics based on large-scale ortholog grouping
 +Ikuo Uchiyama
 +(National Institute for Basic Biology,  Japan)
 +
 +14.20 – 14.40
 +OMA -- Orthology Inference Among 830 Complete Genomes
 +Christophe Dessimoz
 +(ETH Zurich, Switzerland)
 +
 +
 +16.00 – 16.30
 +Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods
 +Adrian Altenhoff
 +(ETH Zurich, Switzerland)
 +
 +16.30 – 16.50
 +How Evolutionary Analyses Impacts on New Medicines
 +Julie Huxley-Jones, 
 +(GlaxoSmithKline Pharmaceuticals, UK)
 +
 +16.50 – 17.10
 +Ohnologs gone missing: The problem of orthology assignmente after whole genome duplication
 +John Postlethwait, 
 +(University of Oregon, USA)
 +
 +17.10 – 17.30
 +eggNOG v2.0: evolutionary genealogy of genes Non-supervised Orthologous Groups
 +Jean Muller, 
 +(EMBL, Germany)
 +
 +17.30 – 18.00
 +OrthoMCL: Robust Automated Multi-Species Ortholog Identification
 +David Roos
 +(University of Pennsylvania, USA)
 +
 +==== Sun 5 July ====
 +
 +09.00 – 09.30
 +Sequencing, Sequencing and Sequencing
 +Jun Wang
 +(Beijing Genomics Institute-Shenzhen, China)
 +Incorporating Species Phylogeny in the Reconstruction of Gene Trees
 +Heng Li
 +(Wellcome Trust Sanger Institute UK)
 +
 +09.30 – 09.50
 +Conservation and Consequences of Alternative Splicing in Human and Mouse
 +Jennifer Harrow, 
 +(Wellcome Trust Sanger Institute, UK)
 +
 +09.50 – 10.20
 +UniProtKB: Both a User of and a Hub for Phylogenomic Information
 +Brigitte Boeckmann
 +(Swiss Institute of Bioinformatics, Switzerland)
 +
 +
 +10.50 – 11.10
 +Identifying the Orthologs of Pig Genes
 +Alan Archibald
 +(University of Edinburgh, UK)
 +
 +
 +
 +