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agenda_2009 [2017/02/17 17:53] (current) Cécile Pereira created |
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+ | ==== Friday 3 July ==== | ||
+ | |||
+ | 13.00 – 13.30 | ||
+ | Genome-wide identification of orthologs and phylogenetic gene tree reconstruction | ||
+ | Ilan Wapinski | ||
+ | (Broad Institute of MIT and Harvard, Cambridge, MA USA) | ||
+ | |||
+ | 13.30 – 14.00 | ||
+ | Whole Genome Orthology Prediction Among Amniotes | ||
+ | Leo Goodstadt | ||
+ | (MRC Functional Genetics Unit, University of Oxford, UK) | ||
+ | |||
+ | 14.00 – 14.30 | ||
+ | Annotating Gene Histories | ||
+ | Guy Perriere, | ||
+ | (University of Lyon, France) | ||
+ | |||
+ | 14.30 – 15.00 | ||
+ | Orthologs as the New Homologs – Evolution and Functional Inference | ||
+ | William Pearson | ||
+ | (William Pearson, USA) | ||
+ | |||
+ | 15.00 – 15.30 | ||
+ | Phylogeny-Based Prediction of Orthology at Genomic Scales: Challenges and Opportunities | ||
+ | Toni Gabaldon | ||
+ | (Centre for Genomic Regulation, Spain) | ||
+ | |||
+ | |||
+ | 16.00 – 16.20 | ||
+ | Classifying of orthology relation and inferring protein interaction from correlations of evolutionary distances | ||
+ | Teresa Przytck | ||
+ | ( NIH, USA) | ||
+ | |||
+ | 16.20 – 16.50 | ||
+ | Orthology, Paralogy and Beyond: | ||
+ | Annotating Gene Function using Evolutionary Trees | ||
+ | Paul Thomas | ||
+ | (SRI International, USA) | ||
+ | |||
+ | 16.50 – 17.20 | ||
+ | Albert Vilella | ||
+ | (EBI, UK) | ||
+ | |||
+ | 17.20 – 17.50 | ||
+ | Orthology Prediction in the Twilight Zone | ||
+ | Martijn Huynen | ||
+ | (Radboud University Nijmegen Medical Centre, Netherlands) | ||
+ | |||
+ | ==== Sat 4 July==== | ||
+ | |||
+ | |||
+ | 09.00 – 09.20 | ||
+ | Using Synteny to Sort Out Reciprocal Gene Loss and Rapid Ortholog Divergence in Yeast Species | ||
+ | Ken Wolfe | ||
+ | (Smurfit Institute of Genetics, Ireland) | ||
+ | |||
+ | 09.20 – 09.40 | ||
+ | Yeast researches need well-defined orthology dataset | ||
+ | Mike Cherry | ||
+ | (Stanford University USA) | ||
+ | |||
+ | 09.40 – 10.10 | ||
+ | Erik Sonnhammer | ||
+ | (Stockholm University, Sweden) | ||
+ | |||
+ | 10.10 – 10.40 | ||
+ | Efficient Bayesian Reconstruction and Reconciliation of Thousands of Gene Family Phylogenies Across Multiple Complete Genomes | ||
+ | Matt Rasmussen/Manolis Kellis | ||
+ | (MIT, USA) | ||
+ | |||
+ | 11.10 – 11.40 | ||
+ | The Gene Ontology's Reference Genome Project: | ||
+ | a Unified Framework for Functional Annotation across Species | ||
+ | Pascale Gaudet | ||
+ | (Northwestern University, USA) | ||
+ | |||
+ | 11.40 – 12.10 | ||
+ | PAINT: The GO Workbench for Protein Family Annotation | ||
+ | Suzanna Lewis, Lawrence Berkeley National Laboratory, USA | ||
+ | |||
+ | 12.10 – 12.40 | ||
+ | Orthologs, Paralogs, and Functional Annotations Using The Gene Ontology | ||
+ | Judy Blake | ||
+ | (The Jackson Lab, USA) | ||
+ | |||
+ | 12.40 – 13.10 | ||
+ | ProGMap: an integrated annotation resource for protein orthology | ||
+ | Jack Leunissen/Sandor Pongor | ||
+ | (Wageningen University, Netherlands) | ||
+ | |||
+ | |||
+ | 13.40 – 14.00 | ||
+ | HCOP: A one stop orthology shop | ||
+ | Michael Lush | ||
+ | (HGNC, UK) | ||
+ | |||
+ | 14.00 – 14.20 | ||
+ | MBGD and RECOG: integrated platform for comparative genomics based on large-scale ortholog grouping | ||
+ | Ikuo Uchiyama | ||
+ | (National Institute for Basic Biology, Japan) | ||
+ | |||
+ | 14.20 – 14.40 | ||
+ | OMA -- Orthology Inference Among 830 Complete Genomes | ||
+ | Christophe Dessimoz | ||
+ | (ETH Zurich, Switzerland) | ||
+ | |||
+ | |||
+ | 16.00 – 16.30 | ||
+ | Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods | ||
+ | Adrian Altenhoff | ||
+ | (ETH Zurich, Switzerland) | ||
+ | |||
+ | 16.30 – 16.50 | ||
+ | How Evolutionary Analyses Impacts on New Medicines | ||
+ | Julie Huxley-Jones, | ||
+ | (GlaxoSmithKline Pharmaceuticals, UK) | ||
+ | |||
+ | 16.50 – 17.10 | ||
+ | Ohnologs gone missing: The problem of orthology assignmente after whole genome duplication | ||
+ | John Postlethwait, | ||
+ | (University of Oregon, USA) | ||
+ | |||
+ | 17.10 – 17.30 | ||
+ | eggNOG v2.0: evolutionary genealogy of genes Non-supervised Orthologous Groups | ||
+ | Jean Muller, | ||
+ | (EMBL, Germany) | ||
+ | |||
+ | 17.30 – 18.00 | ||
+ | OrthoMCL: Robust Automated Multi-Species Ortholog Identification | ||
+ | David Roos | ||
+ | (University of Pennsylvania, USA) | ||
+ | |||
+ | ==== Sun 5 July ==== | ||
+ | |||
+ | 09.00 – 09.30 | ||
+ | Sequencing, Sequencing and Sequencing | ||
+ | Jun Wang | ||
+ | (Beijing Genomics Institute-Shenzhen, China) | ||
+ | Incorporating Species Phylogeny in the Reconstruction of Gene Trees | ||
+ | Heng Li | ||
+ | (Wellcome Trust Sanger Institute UK) | ||
+ | |||
+ | 09.30 – 09.50 | ||
+ | Conservation and Consequences of Alternative Splicing in Human and Mouse | ||
+ | Jennifer Harrow, | ||
+ | (Wellcome Trust Sanger Institute, UK) | ||
+ | |||
+ | 09.50 – 10.20 | ||
+ | UniProtKB: Both a User of and a Hub for Phylogenomic Information | ||
+ | Brigitte Boeckmann | ||
+ | (Swiss Institute of Bioinformatics, Switzerland) | ||
+ | |||
+ | |||
+ | 10.50 – 11.10 | ||
+ | Identifying the Orthologs of Pig Genes | ||
+ | Alan Archibald | ||
+ | (University of Edinburgh, UK) | ||
+ | |||
+ | |||
+ | |||
+ | |||