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programme [2017/02/16 00:55] (current) Cécile Pereira created |
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+ | =====Monday 25th May 2015 ===== | ||
+ | |||
+ | Erik Sonnhammer | ||
+ | "Summary of past QfO achievements and open issues" | ||
+ | |||
+ | =====Lightning Talks===== | ||
+ | |||
+ | Paul Thomas (University of Southern California, USA) | ||
+ | “Toward a common resource for protein-coding gene families” | ||
+ | |||
+ | Martin Steinegger (Max Planck Institute, Spain) | ||
+ | “The MMseqs suite for fast and sensitive batch searching and clustering of huge protein sequence sets” | ||
+ | |||
+ | Damian Szklarczyk (SIB / University of Zurich, Switzerland) | ||
+ | “Interolog predictions in STRING using eggNOG” | ||
+ | |||
+ | Hirokazu Chiba (National Institute for Basic Biology, Japan) | ||
+ | “Applying RDF/SPARQL to ortholog databases” | ||
+ | |||
+ | Jeremy Levy (UCL, United Kingdom) | ||
+ | “Comparison of CEGMA, single-copy OrthoMCL, and OMA for the construction of supermatrices in species phylogenetic analyses” | ||
+ | |||
+ | Claire McWhite (University of Texas at Austin, USA) | ||
+ | “Ortholog profiling” | ||
+ | |||
+ | Steven Müller (University College London GEE, United Kingdom) | ||
+ | “FamilyAnalyser - Getting the best out of your OrthoXML” | ||
+ | |||
+ | Ivana Piližota (University College London, United Kingdom) | ||
+ | “Speeding-up homology inference” | ||
+ | |||
+ | Clement Train (ETH ZURICH, Dessimoz group, Switzerland) | ||
+ | “Efficiently Inferring Hierarchical Orthologous Groups in a Large Comparative Genomics Setup” | ||
+ | |||
+ | Henning Redestig (Bayer Cropscience, Belgium) | ||
+ | “Using the OMA orthology database to navigate crop proteomes” | ||
+ | |||
+ | Erik Sonnhammer (Stockholm University, Sweden) | ||
+ | “New InParanoid developments” | ||
+ | |||
+ | Nives Skunca (ETH, Switzerland) | ||
+ | “Comparison of different strategies for predicting function in the OMA database” | ||
+ | |||
+ | Natasha Glover (UCL and BayerCropScience, Belgium) | ||
+ | “Homeologs: What are they? How to infer them? What are they useful for?” | ||
+ | |||
+ | ====Open Plenary Lecture==== | ||
+ | |||
+ | Eugene V Koonin (NIH, USA) | ||
+ | “Orthology: the shifting cornerstone of genomics” | ||
+ | |||
+ | =====Poster session sponsored by Illumina===== | ||
+ | | ||
+ | =====Tuesday 26th May===== | ||
+ | |||
+ | =====Session "Orthology methods and resource advances I"===== | ||
+ | |||
+ | Salvador Capella-Gutierrez (CRG, Spain) | ||
+ | "PhylomeDB: where every protein has its tree." | ||
+ | |||
+ | El-Mabrouk Nadia (University of Montreal, Canada) | ||
+ | “Orthology and paralogy relations versus Gene trees: Agreement, Correction and Optimality.” | ||
+ | |||
+ | Mateus Patricio (EBI, United Kingdom) | ||
+ | “TreeFam: HMM classification of hundreds of genomes across Ensembl and Ensembl genomes” | ||
+ | |||
+ | Evgenia Kriventseva (UniGe, SIB, Switzerland) | ||
+ | “OrthoDB in 2015: scaling up the data and the user experience.” | ||
+ | |||
+ | Jaime Huerta-Cepas (Embl, Germany) | ||
+ | “EggNOG 2015” | ||
+ | |||
+ | Mateusz Kaduk (Stockholm University, Sweden) | ||
+ | “Improving Hieranoid: hierarchical orthology inference” | ||
+ | |||
+ | =====Session "Shared resources in the orthology community"===== | ||
+ | |||
+ | Boeckmann Brigitte (Swiss-Prot group, SIB, Switzerland) | ||
+ | “Quest for Orthologs (QfO) entails Quest for Tree of Life (QfToL): in Search of the Gene Stream” | ||
+ | |||
+ | Alan Sousa da Silva (EMBL-EBI, United Kingdom) | ||
+ | “The new extended UniProt Reference Proteomes and its implications for the QfO” | ||
+ | |||
+ | Jesualdo Tomás Fernández-Breis (Universidad de Murcia, Spain) | ||
+ | “Efforts in the semantic standardization of orthology content” | ||
+ | |||
+ | =====Session "Orthology methods and resource advances II"===== | ||
+ | |||
+ | Sergei Mekhedov (ATTAIN, USA) | ||
+ | “Orthology redefined: Clusters of orthologous domains in Eukaryotes” | ||
+ | |||
+ | Ikuo Uchiyama (National Institute for Basic Biology, Japan) | ||
+ | “New developments in MBGD: incorporation of draft genome data and refinement of domain-level ortholog identification ” | ||
+ | |||
+ | Adrian Altenhoff (SIB, Switzerland) | ||
+ | “SIBLINGs: sharing all-against-all comparison across orthology projects” | ||
+ | |||
+ | Odile Lecompte (iCUBE, Université de Strasbourg, France) | ||
+ | “MyGeneFriends: a social network linking genes, diseases and researchers” | ||
+ | |||
+ | Cedric Notredame (CRG, Spain) | ||
+ | “Growing taller phylogenetic trees on structural compost” | ||
+ | |||
+ | |||
+ | =====Discussion Session===== | ||
+ | moderators Erik Sonnhammer, Christophe Dessimoz | ||
+ | |||
+ | =====Session “From evolution to function”===== | ||
+ | |||
+ | Bethan Yates (HUGO Gene Nomenclature Committee, EMBL-EBI, United Kingdom) | ||
+ | “HGNC Efforts To Standardise Gene Nomenclature Across Vertebrate Genomes.” | ||
+ | |||
+ | Cécile Pereira (Université Pairs-Sud, France) | ||
+ | “A meta-approach for improving the prediction and the functional annotation of ortholog groups” | ||
+ | |||
+ | Benjamin Liebeskind (University of Texas at Austin, USA) | ||
+ | “Orthologous systems and human disease.” | ||
+ | |||
+ | Suzanna Lewis (Lawrence Berkeley National Laboratory, USA) | ||
+ | "Phylogeny-driven approaches to protein function determination." | ||
+ | |||
+ | Shigehiro Kuraku (RIKEN Center for Life Science Technologies, Japan) | ||
+ | “Assessing vertebrate homolog space - from EvoDevo viewpoint” | ||
+ | |||
+ | Klaas Vandepoele (Department of Plant Biotechnology and Bioinformatics (WE09), Ghent University, Belgium) | ||
+ | “Hunting the unknown: gene function prediction in plants using comparative genomics and next-generation sequencing data analysis” | ||
+ | |||
+ | |||
+ | =====Discussion Session===== | ||
+ | Moderators Toni Gabaldon, Paul Thomas | ||