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publications [2023/07/03 20:02] Dannie Durand |
publications [2023/07/10 11:49] (current) Felix Langschied |
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- | ===== Publications ===== | + | ====== Publications ====== |
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* [[https://doi.org/10.1093/nar/gkac330| The Quest for Orthologs orthology benchmark service in 2022.]] \\ | * [[https://doi.org/10.1093/nar/gkac330| The Quest for Orthologs orthology benchmark service in 2022.]] \\ | ||
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E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A. | E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A. | ||
Nucleic Acids | Nucleic Acids | ||
- | Res. 2022 Jul 5;50(W1):W623-W632. doi: 10.1093/nar/gkac330. | + | Res. 2022 Jul 5;50(W1):W623-W632. doi: 10.1093/nar/gkac330. |
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Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. | Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. | ||
- | * [[https://doi.org/10.1093/nar/gkac330| Advances and Applications in the Quest for Orthologs]] \\ | + | * [[https://doi.org/10.1093/nar/gkaa308| The Quest for Orthologs benchmark service and consensus calls in 2020. ]] \\ |
+ | Altenhoff AM, Garrayo-Ventas J, Cosentino S, Emms D, Glover NM, Hernández-Plaza A, Nevers Y, Sundesha V, Szklarczyk D, Fernández JM, Codó L, For Orthologs Consortium TQ, Gelpi JL, Huerta-Cepas J, Iwasaki W, Kelly S, Lecompte O, Muffato M, Martin MJ, Capella-Gutierrez S, Thomas PD, Sonnhammer E, Dessimoz C. Nucleic Acids Res. 2020 Jul 2;48(W1):W538-W545. doi: 10.1093/nar/gkaa308. | ||
+ | |||
+ | * [[https://doi.org/10.1093/molbev/msz150| Advances and Applications in the Quest for Orthologs]] \\ | ||
Glover N, Dessimoz C, Ebersberger I, Forslund SK, Gabaldón T, Huerta-Cepas J, Martin MJ, Muffato M, Patricio M, Pereira C, da Silva AS, Wang Y, Sonnhammer E, Thomas PD. | Glover N, Dessimoz C, Ebersberger I, Forslund SK, Gabaldón T, Huerta-Cepas J, Martin MJ, Muffato M, Patricio M, Pereira C, da Silva AS, Wang Y, Sonnhammer E, Thomas PD. | ||
Mol Biol Evol. 2019 Oct 1;36(10):2157-2164. doi: 10.1093/molbev/msz150. | Mol Biol Evol. 2019 Oct 1;36(10):2157-2164. doi: 10.1093/molbev/msz150. | ||
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Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. | Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. | ||
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+ | *[[https://doi.org/10.1093/bioinformatics/btu492| Big data and other challenges in the quest for orthologs.]] \\ | ||
+ | Sonnhammer, E. L., Gabaldón, T., Sousa da Silva, A. W., Martin, M., Robinson-Rechavi, M., Boeckmann, B., Thomas, P. D., Dessimoz, C., & Quest for Orthologs consortium (2014). Bioinformatics (Oxford, England), 30(21), 2993–2998. | ||
+ | |||
+ | *[[https://dx.doi.org/10.1093/bioinformatics/bts050| Toward community standards in the quest for orthologs]] \\ | ||
+ | Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J; Quest for | ||
+ | Orthologs Consortium. Bioinformatics. 2012 Mar 15;28(6):900-4. doi: 10.1093/bioinformatics/bts050. Epub 2012 Feb 12. |