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standards [2011/07/06 17:27] Admin |
standards [2013/07/26 11:20] Toni Gabaldon added link to Newick to OrthoXML |
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| ====== Community Standards ====== | ====== Community Standards ====== | ||
| - | ===== Standard File Formats ===== | ||
| - | * [[http://seqxml.org|SeqXML]] | ||
| - | * [[http://orthoxml.org|OrthoXML]] | ||
| ===== Reference Proteomes ===== | ===== Reference Proteomes ===== | ||
| * [[http://www.ebi.ac.uk/reference_proteomes/|Reference Proteome Homepage]] | * [[http://www.ebi.ac.uk/reference_proteomes/|Reference Proteome Homepage]] | ||
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| + | ===== Standard File Formats ===== | ||
| + | * [[http://orthoxml.org|SeqXML & OrthoXML]] | ||
| + | * [[http://dx.doi.org/10.1093/bib/bbr025|Schmitt et al., Brief Bioinform 2011]] | ||
| + | * [[https://github.com/jhcepas/ete/blob/2.2/scripts/etree2orthoxml| Newick to OrthoXML converter, based on [[http://cgenomics.org| ETE]] ]] | ||
| ===== Benchmarking Service ===== | ===== Benchmarking Service ===== | ||
| * [[http://orthology.benchmark-service.org/|Orthology Benchmarking]] | * [[http://orthology.benchmark-service.org/|Orthology Benchmarking]] | ||
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