Differences

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--- standards [2011/07/06 15:06] – created Admin
+++ standards [2021/03/08 09:47] (current) – [Standard File Formats] Adrian Altenhoff
@@ Line 1: / Line 1: @@
 ====== Community Standards ======
-===== Standard File Formats =====
-  * [[http://seqxml.org|SeqXML]]
-  * [[http://orthoxml.org|OrthoXML]]
 ===== Reference Proteomes =====
   * [[http://www.ebi.ac.uk/reference_proteomes/|Reference Proteome Homepage]]
+===== Standard File Formats =====
+  * [[http://orthoxml.org|SeqXML & OrthoXML]]
+  * [[http://dx.doi.org/10.1093/bib/bbr025|Schmitt et al., Brief Bioinform 2011]]
+  * [[https://github.com/jhcepas/ete/blob/2.2/scripts/etree2orthoxml| Newick to OrthoXML converter, based on ETE]]
+  * Orthology (ORTH) Ontology
+    * [[https://qfo.github.io/OrthologyOntology/|Documentation]]
+    * [[https://purl.org/net/orth|RDF/Turtle file]]
-===== Benchmarking Server =====
+===== Benchmarking Service =====
+  * [[http://orthology.benchmark-service.org/|Orthology Benchmarking]]