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standards [2011/07/06 15:06] – created Adminstandards [2021/03/08 09:47] (current) – [Standard File Formats] Adrian Altenhoff
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 ====== Community Standards ====== ====== Community Standards ======
  
-===== Standard File Formats ===== 
-  * [[http://seqxml.org|SeqXML]] 
-  * [[http://orthoxml.org|OrthoXML]] 
  
 ===== Reference Proteomes ===== ===== Reference Proteomes =====
   * [[http://www.ebi.ac.uk/reference_proteomes/|Reference Proteome Homepage]]   * [[http://www.ebi.ac.uk/reference_proteomes/|Reference Proteome Homepage]]
 +
 +===== Standard File Formats =====
 +  * [[http://orthoxml.org|SeqXML & OrthoXML]]
 +  * [[http://dx.doi.org/10.1093/bib/bbr025|Schmitt et al., Brief Bioinform 2011]]
 +  * [[https://github.com/jhcepas/ete/blob/2.2/scripts/etree2orthoxml| Newick to OrthoXML converter, based on ETE]]
 +  * Orthology (ORTH) Ontology
 +    * [[https://qfo.github.io/OrthologyOntology/|Documentation]]
 +    * [[https://purl.org/net/orth|RDF/Turtle file]]
  
  
-===== Benchmarking Server =====+===== Benchmarking Service ===== 
 +  * [[http://orthology.benchmark-service.org/|Orthology Benchmarking]]